Ideally should be placed
near a window, for the shortest possible run of extraction duct, but
I didn't have that luxury so it's sitting on a bench in the middle
of the garage. Coolant pump is underneath and the extraction duct
goes vertically up to the roof.

The computer doesn't have
to be anything special. A little LCD screen is very nice!
Because there are optics
inside, it should ideally be sited away from any sources of dust,
dirt (for example, grinding or polishing).
The extraction fan supplied
with the machine is a centrifugal type which is proving to be a bit
underpowered (part of the problem might be the length of extraction
ducting I have).
Anyway, the fan is mounted
on the back of the machine and is supposed to suck fumes out from
the rear of the cutting area.

A thin layer of foam taped
around the fan outlet makes a nice fit with the hose that's supplied.
From there, the hose goes up to the ceiling, along, and then out the
end of the garage.
Part of the piping is 68mm
downpipe, which may be restricting the flow (in fact, it definitely
is!). But short of cutting a hole in the roof directly above the machine,
it's the only option.
Now, like I said, the supplied
fan on its own is rather underpowered - when the cutting head is operating
away from the extraction duct (i.e. at the front of the table), the
smoke hangs around the head for quite some time. In addition, there
is no obvious air inlet into the cutting space - air must just leak
into the gaps in the case.
Commercial machines have
an important difference. They too have an extraction duct from the
rear of the table, but the machine enclosure is tightly sealed and
there is a horizontal inlet at the front of the machine for
air to go in to the cutting space. The net effect of this
is a nice sheet of flowing air from the front to the back of the cutting
table, which carries smoke away effectively. This "sheet"
of air flows underneath the lens, so smoke can never rise to dirty
it.
So a possible modification
might be to use a plasma cutter to cut a rectangular slot in the front
of the machine (sounds horrible, but probably doable!) so we can mimic
this airflow. The downside of a front-to-back airflow is that the
smoke, vapours, fumes etc. are carried over the workpiece. If you
were doing something like MDF which contains a binder, the fumes might
condense on the other part of the board and mess it up.
Thoughts on nozzle
assist/extraction.
Commercial machines use a pressurised air assist to the cutting lens.
When engraving, this simply helps to ensure fumes can never reach
the lens and cleans the cutting area. When cutting, this air jet blows
through the cut and can help cut thicker materials. One maker of engravers
(Trotec) actually has a fume extraction from around the nozzle as
well, avoiding the problem of fumes flowing over the material described
above.
How easy this would be
to implement on this machine, I'm not sure. A problem is that the
cutting head initially (on machine power-up) parks over the plastic
surround at the back-right of the cutting area. There is not enough
height clearance here to fit a nozzle. And if one was fitted when
the head was over the cutting area, it would crash when the machine
was restarted. It might be possible to make a loosely attached nozzle
that could fall off if you ever forgot this.....
Cooling water is pumped
round a closed loop using a little submersible aquarium pump. A 10L
container will provide ample volume (remember the actual proportion
of time the laser is on is probably quite small). I'd suggest putting
a little digital thermometer in the tank (the type with the remote
temperature sensor) just to keep an eye on it. I wouldn't let it go
above 30 degrees.
I measured the flowrate
and it's around 0.8 L/min

It would be good practice
to install a flow switch which ensures the laser can't be switched
on when there is no coolant flowing. Simplest would be to connect
it in series with the case lid interlock switch.
When you start the system,
ensure there aren't any large trapped air bubbles in the laser tube,
as these could cause hotspots in the tube when it's running. If you
have a decent flowrate it should carry any bubbles out the tube.
Distilled water? Although
they recommend distilled water, I don't really see the point, especially
as you're going to have to change it if it ever gets too hot. Distilled
water isn't the cheapest......If you were really keen then you could
run a fan and heat exchanger in the loop. The tube dissipates around
500W of heat running at full power, so be sure it can cope with this.